inputprocess

This function is used for auto input files arrangement.

Note

This function is designed for pipeline, so user must set Configure before using.

Parameters

inputprocess(fqInput1=None, fqInput2=None,
             inputFolder=None, stepNum=1,
             upstream=None)

• fqInput1: list, fastq files for single end data; _1 files for paired end data.

• fqInput2: list, [] for single end data; _2 files for paired end data.

• inputFolder: input folder contains all your input fastq data, the program will detect inputs automatically.

• stepNum: Step number for folder name.

• upstream: Not used parameter, do not set this parameter.

Example usage:

inputprocess(inputFolder="path_to_data")