fraglenplot

This function is used for ploting fragment length distribution.

Note

This function do not suit for single end data.

Parameters

fraglenplot(bedInput=None, outputdir=None,
            maxLimit=500, threads=None,
            stepNum=None, upstream=None,
            verbose=True)

  • bedInput: list, input bed files.

  • outputdir: str, output result folder, None means the same folder as input files.

  • maxLimit: int, maximum length to be considered.

  • ratio1, ratio2: proportion statistics break point, default: 150, 400

  • threads: int, how many thread to use.

  • stepNum: int or str, step flag for folder name.

  • upstream: upstream output results, used for pipeline. This parameter can be True, which means a new pipeline start.

  • verbose: bool, True means print all stdout, but will be slow; False means black stdout verbose, much faster.

Example usage:

beds = ["test1.bed", "test2.bed"]

fraglenplot(bedInput=beds)